PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000697.1_g00018.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 133aa    MW: 15157.7 Da    PI: 7.5088
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000697.1_g00018.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.22.3e-191364256
                      AP2  2 gykGVrwdkkrgrWvAeIrdpseng..krkrfslgkfgtaeeAakaaiaarkklege 56
                             +y+GVr ++ +g+++AeIrd       + +r++lg+f taeeAa+a+++a+ +++g+
  Itr_sc000697.1_g00018.1 13 KYRGVRKRP-WGKFAAEIRD----SarQGARVWLGTFNTAEEAARAYDRAAYAMRGH 64
                             8********.**********....33334**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.2E-151364IPR001471AP2/ERF domain
CDDcd000184.32E-181372No hitNo description
Gene3DG3DSA:3.30.730.101.3E-311373IPR001471AP2/ERF domain
SMARTSM003805.2E-341377IPR001471AP2/ERF domain
PROSITE profilePS5103223.5511371IPR001471AP2/ERF domain
SuperFamilySSF541712.68E-231372IPR016177DNA-binding domain
PRINTSPR003679.1E-121425IPR001471AP2/ERF domain
PRINTSPR003679.1E-123753IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 133 aa     Download sequence    Send to blast
MRENERESGG EIKYRGVRKR PWGKFAAEIR DSARQGARVW LGTFNTAEEA ARAYDRAAYA  60
MRGHLAILNF PEEYNLPRTS SHFYSASSAS ASASAASSSS RQEREVLEFE YLDDKVLEEL  120
LDCDKEENRK KRG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3gcc_A5e-281475667ATERF1
2gcc_A5e-281475667ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015068552.12e-56PREDICTED: ethylene-responsive transcription factor ERF096-like
SwissprotQ9LTC59e-45ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLM1B1F26e-56M1B1F2_SOLTU; Uncharacterized protein
TrEMBLK4BDX46e-56K4BDX4_SOLLC; Uncharacterized protein
STRINGPGSC0003DMT4000348712e-55(Solanum tuberosum)
STRINGSolyc03g005500.1.12e-55(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.12e-32ERF family protein